Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs7713877 | chr5:127428825 | G/T | 0.000152 | 178 | 16.17 | 13.95 | 7.87 | KM Plot |
| PAAD | rs77143075 | chr17:27149923 | A/G | 2.14E-5 | 172 | 15.48 | 16.03 | 3.67 | KM Plot |
| PAAD | rs77168416 | chr1:227321838 | T/G | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |
| PAAD | rs77200599 | chr7:102663314 | A/G | 6.7E-8 | 178 | 16.17 | 12.2 | 3.43 | KM Plot |
| PAAD | rs7720316 | chr5:172099476 | T/C | 7.43E-5 | 177 | 15.4 | 16.13 | 3.9 | KM Plot |
| PAAD | rs77218109 | chr1:227469249 | C/G | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs77220222 | chr1:227342972 | G/T | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs77248128 | chr5:172100997 | A/G | 7.62E-5 | 176 | 15.37 | 16.03 | 3.9 | KM Plot |
| PAAD | rs77251286 | chr1:227512342 | C/T | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs77291093 | chr1:227498752 | G/T | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs77311509 | chr1:227459097 | A/C | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs77317375 | chr1:227511926 | A/G | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs77322490 | chr11:125701344 | C/T | 0.000137 | 176 | 16.1 | 13.25 | 5.03 | KM Plot |
| PAAD | rs77331075 | chr1:200518341 | G/A | 0 | 170 | 15.23 | 16.13 | 1.03 | KM Plot |
| PAAD | rs7734455 | chr5:172099308 | G/T | 7.43E-5 | 177 | 15.4 | 16.13 | 3.9 | KM Plot |